Sr. LIMS Engineer

The Position:

We are seeking a highly skilled and motivated LIMS Engineer to lead the architecture and design of cutting-edge Laboratory Information Management Systems (LIMS) and their integrations within a complex, fast-paced environment. The LIMS Engineer will collaborate closely with the LIMS Administrator, Lab Operations teams, and cross-functional technology teams to ensure that the platform is scalable, efficient, and aligned with both scientific and business objectives. This role requires hands-on experience with modern LIMS platforms such as L7 Informatics, Labbit, or other industry-leading solutions, and will be responsible for building robust system integrations using technologies like AWS, Mulesoft, and APIs. Strong programming skills in Python, SQL, PowerShell, and related tools will be essential for platform customization, automation, and data workflows in compliance-driven environments.

Key Responsibilities:

• Lead or support full life-cycle LIMS implementations, including requirement gathering, system design, configuration, testing, deployment, and documentation.


• Design and develop scalable and maintainable LIMS architectures tailored to laboratory workflows and compliance requirements.


• Customize and extend LIMS platforms using scripting and automation tools to improve usability and performance.


• Collaborate with cross-functional teams including IT, lab personnel, and third-party vendors to ensure seamless system operation and user satisfaction.


• Develop and maintain integrations between LIMS and other enterprise platforms using APIs, Mulesoft, AWS services, and other middleware tools.


• Write and maintain scripts and tools using Python, SQL, PowerShell, and other languages to support system operations, data migrations, and automated workflows.


• Support data structure development and integration efforts, especially using JSON and/or GraphDB


• Ensure LIMS systems are compliant with regulatory standards such as GxP, CAP/CLIA, and other relevant quality frameworks.


• Provide ongoing support, troubleshooting, performance tuning, and end-user training for LIMS systems.

Who You Are:

Required Qualifications:

• Bachelor’s or Master’s degree in Computer Science, Bioinformatics, Engineering, or a related technical field.


• 5-7+ years of experience in LIMS engineering, implementation, and support.


• Hands-on experience with one or more modern LIMS platforms (e.g., L7 Informatics, Labbit, Thermo Fisher SampleManager, LabWare, etc.).


• Proficiency in JSON, Python, SQL, PowerShell, and scripting for automation and data processing.


• Strong understanding of LIMS architecture, relational databases, and lab workflows.


• Proven experience in platform integrations using AWS services, Mulesoft, and REST/SOAP APIs.


• Solid grasp of data security, integrity, and compliance in regulated environments.


• Excellent problem-solving, communication, and documentation skills

Preferred Qualifications:

• Experience with Agile development methodologies and DevOps practices.


• Familiarity with CI/CD pipelines and infrastructure-as-code (e.g., Terraform, CloudFormation).


• Knowledge of laboratory instruments and ELNs (Electronic Lab Notebooks) integration.


• Certification in AWS, Mulesoft, or relevant LIMS platforms.

#LI-Hybrid, or #LI-Remote

For candidates based in our San Diego office, the salary (or hourly range is $140000 - $154000.

For candidates based in our South San Francisco office, the salary or hourly range is $151000 - $168000.

For candidates working remote (US), the salary or hourly range is $132000 - $148000.